Bench2Bio

Bench2Bio is a web app (with a lightweight desktop agent) that converts ad-hoc computational biology work into reproducible, shareable runs. Most labs live in a swamp of notebooks, Slack messages, scattered scripts, and half-documented parameters—then can’t reproduce results six months later. Users paste a protocol, upload key files (FASTQ/FASTA/count matrices), and connect a Git repo. The app generates a structured run plan (inputs, parameters, environment, outputs), executes via containerized workflows, and produces an audit-ready report with versions, checksums, and provenance. It’s a combination traditional + AI app: AI helps extract steps/parameters from notes and suggests standard workflow templates, but execution and provenance are deterministic. The focus is not “discover new biology,” but eliminating the daily operational pain of reruns, handoffs, and reviewer requests for reproducibility.